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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128228648_128230127_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
128228648 - 128230127
Intron Length:
1480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTGTTCTCAACT
Flanking Amino Acid:
MERLLSIPIHGIRAVGTAAV
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
72.1
34.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
73.9
0.54
0.8
71.3
35.2
Minor 5ss
37.8
-1.4
3
42.5
44.6
Minor BPS
67
0.61
1.6
79.52
42.8

Associated Gene:

Gene:
IMPA1
Ensembl Gene ID:
ENSAPLG00000005767
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006002
128227967 - 128235412
7446