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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128231106_128231253_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
128231106 - 128231253
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
GTTTCTTTATTT
Flanking Amino Acid:
VSIGFVVNKKIEFGIVYSCV
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.2
0.88
0.7
84.2
30.3
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
70.4
0.72
1.5
84.38
36.8

Associated Gene:

Gene:
IMPA1
Ensembl Gene ID:
ENSAPLG00000005767
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006002
128227967 - 128235412
7446