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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128231300_128232574_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
128231300 - 128232574
Intron Length:
1275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCACCTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTGTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
CTCACTATAAAT
Flanking Amino Acid:
PIDGTTNFVHRFPFVAVSIG
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59
0.21
1.3
58.3
46.1
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
38.4
-1.3
3.4
57.2
47
Minor BPS
49.1
0.01
1.8
66.63
43.9

Associated Gene:

Gene:
IMPA1
Ensembl Gene ID:
ENSAPLG00000005767
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006002
128227967 - 128235412
7446