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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128234166_128235329_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
128234166 - 128235329
Intron Length:
1164

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
CATTTGTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAGAA
U12 Branch Point Sequence:
CATTTGTTAACA
Flanking Amino Acid:
AVTLARKAGEIICGALKEEK
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.8
87.8
27.9
Major BPS
58.2
0.21
1.1
55.4
40.4
Major PPT
74.3
0.55
1
69.3
40.3
Minor 5ss
35.8
-1.6
3.3
48.1
47.6
Minor BPS
60.4
0.32
2.1
71.72
40.6

Associated Gene:

Gene:
IMPA1
Ensembl Gene ID:
ENSAPLG00000005767
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006002
128227967 - 128235412
7446