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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128239845_128242877_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
128239845 - 128242877
Intron Length:
3033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGCTTTATTT
Flanking Amino Acid:
HACGDKSLPQTERIYFQVYL
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1.2
84
30.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
37.3
-1.4
2.8
49.7
46.6
Minor BPS
65.7
0.57
1.7
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018454
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044860
128239382 - 128243859
4478