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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128243860_128243935_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
128243860 - 128243935
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTGTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TATGCATTAATG
Flanking Amino Acid:
CPYCEKHFCLRHRHQSDHEC
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.2
0.63
0.9
71.5
38.3
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
60.1
0.18
1.8
65.77
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030779
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024936
128243595 - 128244509
915