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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128246819_128254769_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
128246819 - 128254769
Intron Length:
7951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCATTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
TCTGCATTACAG
Flanking Amino Acid:
ARQHGTKNKRAALQALKRKK
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.1
37.5
Major BPS
60.3
0.26
1
65.5
28
Major PPT
76.2
0.59
0.9
68.8
35.9
Minor 5ss
23.1
-3.1
3.2
27.7
44.2
Minor BPS
45.4
-0.4
2.1
53.39
47.1

Associated Gene:

Gene:
CHMP4C
Ensembl Gene ID:
ENSAPLG00000029536
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037860
128246620 - 128263575
16956