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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128254948_128255857_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
128254948 - 128255857
Intron Length:
910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTACTTTTAAAA
Flanking Amino Acid:
AQAMKKVHENMDLNKIDDLM
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
1
77.4
37.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.9
0.58
1
69.8
45.2
Minor 5ss
39.3
-1.2
3
56.4
40.7
Minor BPS
57.7
0.24
1.4
63.56
36

Associated Gene:

Gene:
CHMP4C
Ensembl Gene ID:
ENSAPLG00000029536
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037860
128246620 - 128263575
16956