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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128259443_128261659_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
128259443 - 128261659
Intron Length:
2217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAACTGC
5'SS Class:
major
3'SS Sequence:
TCTTTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTATTGTTAATC
Flanking Amino Acid:
VPSTSLPSRPASTRKRVEDE
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
57.8
42.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
89.4
0.89
0.6
84.8
22.8
Minor 5ss
44
-0.6
3
59.1
45.8
Minor BPS
62
0.36
2
74.44
36.6

Associated Gene:

Gene:
CHMP4C
Ensembl Gene ID:
ENSAPLG00000029536
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037860
128246620 - 128263575
16956