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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128273970_128276154_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
128273970 - 128276154
Intron Length:
2185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTACTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CTGTTCTTACTT
Flanking Amino Acid:
LHIDAIERRIRDLSSGKMTR
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
81.6
0.71
0.9
76
37.8
Minor 5ss
41.2
-1
2.5
51.4
45.1
Minor BPS
61.7
0.44
1.6
74.52
43.3

Associated Gene:

Gene:
SNX16
Ensembl Gene ID:
ENSAPLG00000005095
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043346
128273438 - 128296015
22578
ENSAPLT00000031894
128272664 - 128292714
20051
ENSAPLT00000005270
128273665 - 128292714
19050