About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128285047_128288455_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
128285047 - 128288455
Intron Length:
3409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACTTTTTTATTT
Flanking Amino Acid:
YTDFSRLNDKLKDMFPGFRL
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.8
83.3
27.9
Major BPS
100
1.24
0.5
100
0
Major PPT
80.9
0.69
0.8
79
33.5
Minor 5ss
30.7
-2.2
2.9
41.1
44.9
Minor BPS
59.7
0.38
1.5
72.97
39.1

Associated Gene:

Gene:
SNX16
Ensembl Gene ID:
ENSAPLG00000005095
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031894
128272664 - 128292714
20051
ENSAPLT00000005270
128273665 - 128292714
19050
ENSAPLT00000043346
128273438 - 128296015
22578