About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128422238_128436746_F

Intron Information:

Intron Rank:
129620
Intron Class:
major
Intron Phase:
Intron Coordinates:
128422238 - 128436746
Intron Length:
14509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
94.5
1
0.6
88
29.4
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
69.5
0.69
1.5
84.41
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019757
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034280
128422038 - 128443018
20981