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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128436999_128442767_F

Intron Information:

Intron Rank:
129621
Intron Class:
major
Intron Phase:
Intron Coordinates:
128436999 - 128442767
Intron Length:
5769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATCATG
5'SS Class:
major
3'SS Sequence:
TTTGTATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GTCATATTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
67.3
43.6
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
86.8
0.83
0.8
81.4
35.2
Minor 5ss
43.2
-0.7
2.9
54.7
43.7
Minor BPS
48.9
-0
1.6
65.02
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019757
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034280
128422038 - 128443018
20981