Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128448224_128449602_R

Intron Information:

Intron Rank:

154290

Intron Class:

major

Intron Phase:

Intron Coordinates:

128448224 - 128449602

Intron Length:

1379

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCATT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTTTTAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

CTCTTTTTAAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.2

1.02

0.8

90.9

28.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

79.9

0.67

81.5

27.9

Minor 5ss

45.3

-0.5

2.9

45.2

Minor BPS

58.8

0.14

1.5

59.29

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030511

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040160

128448176 - 128452153

3978

ENSAPLT00000037601

128448195 - 128454096

5902