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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128449709_128453958_R

Intron Information:

Intron Rank:
154291
Intron Class:
major
Intron Phase:
Intron Coordinates:
128449709 - 128453958
Intron Length:
4250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
AAATCCTAAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.9
38.6
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
80.9
0.7
0.8
75.8
32.8
Minor 5ss
38.7
-1.3
2.8
47.8
47.9
Minor BPS
56
0.27
2
72.54
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030511
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037601
128448195 - 128454096
5902