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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128469856_128541818_F

Intron Information:

Intron Rank:
143807
Intron Class:
major
Intron Phase:
Intron Coordinates:
128469856 - 128541818
Intron Length:
71963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTACAG
U12 Branch Point Sequence:
ATTCCCTGTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
73.5
37
Major BPS
47.5
-0.1
1.6
60.7
45.9
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
34.9
-1.7
2.8
44.7
42.7
Minor BPS
58.2
0.25
1.8
72.58
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027497
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028382
128469555 - 128541945
72391