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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128469856_128575959_F

Intron Information:

Intron Rank:
143809
Intron Class:
major
Intron Phase:
Intron Coordinates:
128469856 - 128575959
Intron Length:
106104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TCTCCCTTGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTGAA
U12 Branch Point Sequence:
TTTTAGTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
73.5
37
Major BPS
64.3
0.35
1.2
55.4
42
Major PPT
76.8
0.6
0.9
76.5
32.1
Minor 5ss
34.9
-1.7
2.8
44.7
42.7
Minor BPS
53.1
0.17
2.3
81.93
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027497
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032407
128455666 - 128576685
121020