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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128606681_128607157_R

Intron Information:

Intron Rank:
143489
Intron Class:
major
Intron Phase:
Intron Coordinates:
128606681 - 128607157
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATGCT
5'SS Class:
major
3'SS Sequence:
TTCTGCCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ACTAATAGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
72.1
37.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
79.9
0.67
0.8
77.6
31.2
Minor 5ss
33.3
-1.9
3.6
49.9
46.5
Minor BPS
43.4
-0.5
1.8
53.61
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024521
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044711
128606392 - 128627370
20979