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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128730638_128731115_F

Intron Information:

Intron Rank:
145945
Intron Class:
major
Intron Phase:
Intron Coordinates:
128730638 - 128731115
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGTA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTTTTTTGTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.9
31.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
87.2
0.84
0.8
84.6
36
Minor 5ss
40.1
-1.1
3.4
55.5
48.7
Minor BPS
46.8
-0.1
3.4
81.5
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028626
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030438
128727653 - 128731275
3623