About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128832191_128856632_R


Intron Information:

Intron Rank:
130399

Intron Class:
major

Intron Phase:

Intron Coordinates:
128832191 - 128856632

Intron Length:
24442

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAAGACCA

5'SS Class:
strong_major

3'SS Sequence:
TGCCTTCCGATAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGTTTAT

U12 Branch Point Sequence:
ATTTCTTTACTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
89.4
0.93
0.8
74.4
36

Major BPS
81.3
0.78
1.1
71.7
44.6

Major PPT
65
0.34
0.9
61.4
35.2

Minor 5ss
32.2
-2
3
40.3
45.3

Minor BPS
71.4
0.75
1.5
85.82
34.8

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

128832073 - 128920060
87988

128832073 - 128856861
24789