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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_128929402_128938183_R

Intron Information:

Intron Rank:
136518
Intron Class:
major
Intron Phase:
Intron Coordinates:
128929402 - 128938183
Intron Length:
8782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATAATAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTAAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
72.8
32.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.5
0.75
0.9
81.8
33.7
Minor 5ss
45
-0.5
3
64.3
47.2
Minor BPS
71
0.66
1.6
82.25
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020881
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026223
128928989 - 128939116
10128