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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129278356_129296627_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
129278356 - 129296627
Intron Length:
18272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TTCTTTATTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGTTCTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
77.4
33.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
78.7
0.64
1
83.7
30.1
Minor 5ss
46.7
-0.3
2.8
68.1
42.7
Minor BPS
70.4
0.72
1.5
84.38
36.8

Associated Gene:

Gene:
RALYL
Ensembl Gene ID:
ENSAPLG00000015574
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021682
129277746 - 129301607
23862