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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129296907_129301554_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
129296907 - 129301554
Intron Length:
4648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTAATGTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TATTTTGTATTT
Flanking Amino Acid:
NARIIAGQPLEIPRDLSIYF
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
67.1
0.39
1
59.2
46
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
48.2
-0
2.2
71.82
40.2

Associated Gene:

Gene:
RALYL
Ensembl Gene ID:
ENSAPLG00000015574
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021682
129277746 - 129301607
23862