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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129296907_129420098_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
129296907 - 129420098
Intron Length:
123192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
AAACCTTTAGCT
Flanking Amino Acid:
NARIIAGQPLDINMAGEPKP
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
84.3
0.77
0.9
81.2
36.5
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
57.8
0.32
1.5
70.44
39.9

Associated Gene:

Gene:
RALYL
Ensembl Gene ID:
ENSAPLG00000015574
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023966
129215406 - 129534977
319572
ENSAPLT00000022319
129296628 - 129498310
201683
ENSAPLT00000016243
129296628 - 129498310
201683
ENSAPLT00000046334
129098859 - 129525209
426351
ENSAPLT00000016241
129296628 - 129498310
201683
ENSAPLT00000044033
129098859 - 129534977
436119