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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129442755_129452683_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
129442755 - 129452683
Intron Length:
9929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
AATTCCTTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
AATTCCTTCACA
Flanking Amino Acid:
LESKEPFLSVGIVVWEEMLE
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
76
0.59
0.9
69.2
36
Minor 5ss
37
-1.5
2.8
43.2
43.8
Minor BPS
71.8
0.68
1.7
79.23
36.7

Associated Gene:

Gene:
RALYL
Ensembl Gene ID:
ENSAPLG00000015574
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044033
129098859 - 129534977
436119
ENSAPLT00000023966
129215406 - 129534977
319572
ENSAPLT00000022319
129296628 - 129498310
201683
ENSAPLT00000046334
129098859 - 129525209
426351