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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129452738_129463041_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
129452738 - 129463041
Intron Length:
10304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTTAA
5'SS Class:
major
3'SS Sequence:
TGTTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTATAA
U12 Branch Point Sequence:
TGTTTTTCCACA
Flanking Amino Acid:
LEAILRTKLLWGYVFDYDYY
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
72.9
34.4
Major BPS
57.5
0.19
1.1
55.2
40.4
Major PPT
84.8
0.78
0.8
80.2
32
Minor 5ss
38.3
-1.3
3.1
45.3
45.2
Minor BPS
49.7
-0
1.9
67.57
39.2

Associated Gene:

Gene:
RALYL
Ensembl Gene ID:
ENSAPLG00000015574
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044033
129098859 - 129534977
436119
ENSAPLT00000023966
129215406 - 129534977
319572
ENSAPLT00000022319
129296628 - 129498310
201683
ENSAPLT00000046334
129098859 - 129525209
426351