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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129463090_129466453_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
129463090 - 129466453
Intron Length:
3364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTGTG
5'SS Class:
major
3'SS Sequence:
TCATCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATGACTTCATCT
Flanking Amino Acid:
YDYYRDDFYNRLFDYHGRVP
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
69.2
41.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
80.2
0.68
0.8
73.2
37
Minor 5ss
42.9
-0.8
3.2
58.1
46.5
Minor BPS
48.7
-0
1.8
67.32
43.5

Associated Gene:

Gene:
RALYL
Ensembl Gene ID:
ENSAPLG00000015574
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016241
129296628 - 129498310
201683
ENSAPLT00000044033
129098859 - 129534977
436119
ENSAPLT00000023966
129215406 - 129534977
319572
ENSAPLT00000022319
129296628 - 129498310
201683
ENSAPLT00000016243
129296628 - 129498310
201683
ENSAPLT00000046334
129098859 - 129525209
426351