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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129466618_129467289_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
129466618 - 129467289
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
GTGCATCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
CTCCCAGGAACT
Flanking Amino Acid:
SSGASSSGSKSPTCLPLPLM
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
76.9
34.5
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
74.1
0.54
1
69.7
41.2
Minor 5ss
38.9
-1.2
3
53.8
43.7
Minor BPS
43.2
-0.4
2.3
63.41
46.2

Associated Gene:

Gene:
RALYL
Ensembl Gene ID:
ENSAPLG00000015574
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023966
129215406 - 129534977
319572
ENSAPLT00000022319
129296628 - 129498310
201683
ENSAPLT00000016243
129296628 - 129498310
201683
ENSAPLT00000046334
129098859 - 129525209
426351
ENSAPLT00000044033
129098859 - 129534977
436119