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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129467371_129475058_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
129467371 - 129475058
Intron Length:
7688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGATC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTTTTCCACA
Flanking Amino Acid:
SVTGRGRERSVKSDELQTIK
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
77
35.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
87.6
0.84
0.6
83.5
24.8
Minor 5ss
35.4
-1.7
3.5
50.7
46.2
Minor BPS
49.6
-0
1.9
66.33
40.9

Associated Gene:

Gene:
RALYL
Ensembl Gene ID:
ENSAPLG00000015574
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044033
129098859 - 129534977
436119
ENSAPLT00000023966
129215406 - 129534977
319572
ENSAPLT00000022319
129296628 - 129498310
201683
ENSAPLT00000016243
129296628 - 129498310
201683
ENSAPLT00000046334
129098859 - 129525209
426351