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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129480036_129525136_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129480036 - 129525136
Intron Length:
45101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TATTCCTATACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TATTCCTATACA
Flanking Amino Acid:
DFDEDGSNELHLHGPALLFH
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
80.4
33.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
79.3
0.66
0.9
73.6
35.7
Minor 5ss
34.1
-1.8
3.3
45.4
43.9
Minor BPS
62.3
0.38
2
76.43
40.4

Associated Gene:

Gene:
RALYL
Ensembl Gene ID:
ENSAPLG00000015574
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046334
129098859 - 129525209
426351