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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129579698_129581376_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
129579698 - 129581376
Intron Length:
1679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TATGCCACTACT
Flanking Amino Acid:
VLTPKEIVSSVAVAVTWADR
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
80.7
31.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
89.8
0.89
0.7
84.9
29.9
Minor 5ss
42.5
-0.8
3.5
64.3
47.2
Minor BPS
46.3
-0.2
2.2
70.7
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016982
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048497
129578095 - 129585595
7501