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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129592929_129593283_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
129592929 - 129593283
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTCGGCAGT
5'SS Class:
weak_major
3'SS Sequence:
TCACTTTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
TTTTCCCTCACT
Flanking Amino Acid:
LSGNLITKVEGLEKLFNLTA
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56
0.14
1.4
54.5
49.7
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
73.4
0.53
0.9
73
37.1
Minor 5ss
34.7
-1.7
3.1
40.3
45.6
Minor BPS
68.8
0.67
2.1
92.91
35.6

Associated Gene:

Gene:
LRRCC1
Ensembl Gene ID:
ENSAPLG00000015947
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016663
129592569 - 129611368
18800