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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129594683_129595478_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
129594683 - 129595478
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGATC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTTTTTGAGA
Flanking Amino Acid:
GKTNPVCQTAGYRETLLQTL
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
78.6
35.4
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
79
0.65
0.9
83.7
25.1
Minor 5ss
42.9
-0.8
3.1
59.7
45.1
Minor BPS
65.4
0.48
1.6
77.15
33.9

Associated Gene:

Gene:
LRRCC1
Ensembl Gene ID:
ENSAPLG00000015947
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016663
129592569 - 129611368
18800