About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129595649_129595758_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129595649 - 129595758
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCATAG
5'SS Class:
major
3'SS Sequence:
TTTCTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TTTCTTTTGACA
Flanking Amino Acid:
SPGSPSSKHQNDVALPVVTP
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.1
0.31
1.2
55.8
40
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
85.5
0.8
0.9
83.5
31.6
Minor 5ss
36.3
-1.6
3.2
46.7
48.6
Minor BPS
71.5
0.67
1.1
79.17
30

Associated Gene:

Gene:
LRRCC1
Ensembl Gene ID:
ENSAPLG00000015947
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016663
129592569 - 129611368
18800