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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129595969_129596784_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129595969 - 129596784
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTTTT
5'SS Class:
strong_major
3'SS Sequence:
GATTTGTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
AAAACCTCGATT
Flanking Amino Acid:
EDQISEILQKVSEASRREAP
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
85.8
25.2
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
72.2
0.5
0.9
69.7
41.2
Minor 5ss
40.8
-1
3
58.4
46.2
Minor BPS
50.3
0.09
1.6
64.33
39.7

Associated Gene:

Gene:
LRRCC1
Ensembl Gene ID:
ENSAPLG00000015947
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016663
129592569 - 129611368
18800