About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129596988_129598010_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
129596988 - 129598010
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCCA
5'SS Class:
strong_major
3'SS Sequence:
CATGCCATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TATATCTTGATC
Flanking Amino Acid:
SNHPKSKVTNREERSSSKCP
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
73.3
37.4
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
66.4
0.37
0.9
58.6
36.8
Minor 5ss
40.6
-1.1
2.7
51
45.4
Minor BPS
65.7
0.48
1.2
70.71
34.5

Associated Gene:

Gene:
LRRCC1
Ensembl Gene ID:
ENSAPLG00000015947
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016663
129592569 - 129611368
18800