Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129598675_129599989_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

129598675 - 129599989

Intron Length:

1315

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGGAAA

5'SS Class:

strong_major

3'SS Sequence:

CGTTTATTCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTAAAA

U12 Branch Point Sequence:

TGCAACTTGATT

Flanking Amino Acid:

IQSMAVYTTERLKELILKER

Intron Amino Acid Position:

472

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

74.9

Major BPS

64.3

0.36

71.3

30.3

Major PPT

79.6

0.67

0.9

77.1

36.1

Minor 5ss

30.2

-2.3

3.3

38.5

46.8

Minor BPS

55.2

0.24

1.6

69.64

41.3

Associated Gene:

Gene:

LRRCC1

Ensembl Gene ID:

ENSAPLG00000015947

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016663

129592569 - 129611368

18800