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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129600195_129602659_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129600195 - 129602659
Intron Length:
2465

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
GAATTCTATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATGAATT
Flanking Amino Acid:
TQRLQQRAIEMKHVQEAELK
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
65.1
0.34
1
58.8
41.7
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
65.1
0.55
1.7
85.81
33.9

Associated Gene:

Gene:
LRRCC1
Ensembl Gene ID:
ENSAPLG00000015947
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016663
129592569 - 129611368
18800