About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129602800_129604209_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
129602800 - 129604209
Intron Length:
1410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCATGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
TTCTCTGTAGTT
Flanking Amino Acid:
ELLILKEQEQRKELETRVAL
Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
74.8
35.2
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
71
0.47
1
61.9
43.5
Minor 5ss
37
-1.5
3.6
54.5
49.7
Minor BPS
50
0.08
2.2
74.98
42.9

Associated Gene:

Gene:
LRRCC1
Ensembl Gene ID:
ENSAPLG00000015947
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016663
129592569 - 129611368
18800