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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129604412_129605278_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129604412 - 129605278
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TATCAAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTATCAAAT
Flanking Amino Acid:
LTIEAKRFKEVKENFENAAA
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.7
33.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
66.7
0.38
1
56.6
42.9
Minor 5ss
44.1
-0.6
2.8
56.9
47.3
Minor BPS
51.2
0.12
1.9
74.46
42

Associated Gene:

Gene:
LRRCC1
Ensembl Gene ID:
ENSAPLG00000015947
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016663
129592569 - 129611368
18800