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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129607627_129608184_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129607627 - 129608184
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GTGTTCTGAAAT
Flanking Amino Acid:
QTETIRRLKESLQEKDQQMR
Intron Amino Acid Position:
830

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
72.5
39.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
80
0.68
1
81.7
27.6
Minor 5ss
41.3
-1
2.8
49.6
41
Minor BPS
60.4
0.4
1.6
74.82
41.4

Associated Gene:

Gene:
LRRCC1
Ensembl Gene ID:
ENSAPLG00000015947
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016663
129592569 - 129611368
18800