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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129608394_129608601_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
129608394 - 129608601
Intron Length:
208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGCAC
5'SS Class:
major
3'SS Sequence:
TATGTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TCTGCATTCATT
Flanking Amino Acid:
VELDDIKKAHSALKKKWQGK
Intron Amino Acid Position:
899

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
61.9
38.4
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
80.7
0.69
0.9
77.2
41.6
Minor 5ss
25.7
-2.8
3.1
32.4
42.5
Minor BPS
49.5
0.04
2.1
72.41
45

Associated Gene:

Gene:
LRRCC1
Ensembl Gene ID:
ENSAPLG00000015947
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016663
129592569 - 129611368
18800