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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129608740_129610192_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
129608740 - 129610192
Intron Length:
1453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAAACC
5'SS Class:
major
3'SS Sequence:
CTTTATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTTTCTTTATTT
Flanking Amino Acid:
EERNRSLQTQRIAMEKLHEM
Intron Amino Acid Position:
945

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
0.9
71
32.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
86
0.81
0.7
84.8
29.6
Minor 5ss
28.6
-2.4
2.9
35.3
40.9
Minor BPS
69.3
0.68
1.6
83.14
39

Associated Gene:

Gene:
LRRCC1
Ensembl Gene ID:
ENSAPLG00000015947
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016663
129592569 - 129611368
18800