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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129620117_129620927_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
129620117 - 129620927
Intron Length:
811

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAT|GCAGTGAAA
5'SS Class:
weak_major
3'SS Sequence:
CTTCTCTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
CTTCTCTTCATA
Flanking Amino Acid:
SGRLPTRWIHAADTLAVRQK
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.3
0.2
1.4
56.4
41
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
80.2
0.68
0.7
75.9
26.3
Minor 5ss
22.4
-3.2
4.1
34
42.2
Minor BPS
56
0.18
1.8
67.76
39.4

Associated Gene:

Gene:
E2F5
Ensembl Gene ID:
ENSAPLG00000016108
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016807
129620006 - 129627793
7788