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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129621038_129621684_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
129621038 - 129621684
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
ATACCTTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTCACGAACC
Flanking Amino Acid:
EKKSKNSIQWKGVGAGCNTK
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
76
34.8
Major BPS
100
1.24
0.5
100
0
Major PPT
68.8
0.42
1.1
72
37.4
Minor 5ss
50.5
0.02
2.7
68.2
36.7
Minor BPS
50.2
-0
2.1
70.86
39.3

Associated Gene:

Gene:
E2F5
Ensembl Gene ID:
ENSAPLG00000016108
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016807
129620006 - 129627793
7788