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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129624410_129626068_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129624410 - 129626068
Intron Length:
1659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
ACCACCTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ACTTTCTTAATG
Flanking Amino Acid:
TQLEVPIPEMGQNGQKKYQI
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.9
34.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
70.6
0.46
0.9
65.8
35.2
Minor 5ss
44.6
-0.6
2.5
57.8
40.7
Minor BPS
72.5
0.57
1.3
68.91
39.2

Associated Gene:

Gene:
E2F5
Ensembl Gene ID:
ENSAPLG00000016108
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016807
129620006 - 129627793
7788