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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129626337_129627033_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
129626337 - 129627033
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
GACTATATAATG
Flanking Amino Acid:
PQTSVVDTPSESSLQQNSTT
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
83.9
30.3
Major BPS
79
0.72
1
78.4
31.2
Major PPT
78
0.63
0.8
72.7
32
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
45.5
-0.4
1.8
47.11
39.9

Associated Gene:

Gene:
E2F5
Ensembl Gene ID:
ENSAPLG00000016108
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016807
129620006 - 129627793
7788