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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129631257_129634032_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129631257 - 129634032
Intron Length:
2776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TCTTCCCTACAG
Flanking Amino Acid:
ARRVTSGLRKINIENADKVS
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
66.6
39.6
Major BPS
66.1
0.4
1
73
31.5
Major PPT
86.3
0.82
0.7
80.7
24.7
Minor 5ss
31.2
-2.1
3.3
41.1
45.6
Minor BPS
48.7
-0.2
2.1
61.25
46.2

Associated Gene:

Gene:
RBIS
Ensembl Gene ID:
ENSAPLG00000029298
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017194
129629849 - 129634155
4307