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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129645074_129648016_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129645074 - 129648016
Intron Length:
2943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTGAT
U12 Branch Point Sequence:
TCAGCGAGAGTT
Flanking Amino Acid:
AVDGMKYAAELHVVHWNAEK
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
72.4
0.56
1.1
63.1
44.4
Major PPT
87
0.83
0.7
84.4
30.5
Minor 5ss
35.3
-1.7
3.4
50.1
46.5
Minor BPS
34.9
-1
2.3
50.27
43.7

Associated Gene:

Gene:
CA13
Ensembl Gene ID:
ENSAPLG00000016183
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016897
129641095 - 129652276
11182