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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_129648113_129649288_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
129648113 - 129649288
Intron Length:
1176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ACTTTTTTATCT
Flanking Amino Acid:
GLAVMAVFLKIGECNPQLKK
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.8
0.6
0.9
72.4
36.5
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
63.8
0.51
1.6
77.22
39.9

Associated Gene:

Gene:
CA13
Ensembl Gene ID:
ENSAPLG00000016183
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016897
129641095 - 129652276
11182